Cristian Tudorel Badea

Positions

• Professor in Radiology
• Research Professor of Biomedical Engineering
• Member of the Duke Cancer Institute

Publications

• Patel R, Mowery YM, Qi Y, Bassil AM, Holbrook M, Xu ES, et al. Supplementary figure FS3 from Neoadjuvant Radiation Therapy and Surgery Improves Metastasis-Free Survival over Surgery Alone in a Primary Mouse Model of Soft Tissue Sarcoma. 2025.
• Patel R, Mowery YM, Qi Y, Bassil AM, Holbrook M, Xu ES, et al. Supplementary table TS1 from Neoadjuvant Radiation Therapy and Surgery Improves Metastasis-Free Survival over Surgery Alone in a Primary Mouse Model of Soft Tissue Sarcoma. 2025.
• Patel R, Mowery YM, Qi Y, Bassil AM, Holbrook M, Xu ES, et al. Supplementary figure FS2 from Neoadjuvant Radiation Therapy and Surgery Improves Metastasis-Free Survival over Surgery Alone in a Primary Mouse Model of Soft Tissue Sarcoma. 2025.
• Patel R, Mowery YM, Qi Y, Bassil AM, Holbrook M, Xu ES, et al. Supplementary figure FS1 from Neoadjuvant Radiation Therapy and Surgery Improves Metastasis-Free Survival over Surgery Alone in a Primary Mouse Model of Soft Tissue Sarcoma. 2025.
• Patel R, Mowery YM, Qi Y, Bassil AM, Holbrook M, Xu ES, et al. Supplementary figure FS4 from Neoadjuvant Radiation Therapy and Surgery Improves Metastasis-Free Survival over Surgery Alone in a Primary Mouse Model of Soft Tissue Sarcoma. 2025.
• Nadkarni R, Han ZY, Allphin AJ, Clark DP, Badea A, Badea CT. Photon-Counting Micro-CT for Bone Morphometry in Murine Models. Tomography (Ann Arbor, Mich). 2025 Nov;11(11):127.
• Gil CJ, Allphin AJ, Jin L, Amoli MS, Rezapourdamanab S, Tomov ML, et al. Image-Guided Cardiac Regeneration via a 3D Bioprinted Vascular Patch with Built-in CT Visibility. Chem Eng J. 2025 Sep 15;520.
• Segars HE, Nadkarni R, Badea CT, Badea A, Chin B, Johnson GA, et al. Development of anatomically variable digital Wistar rat phantoms for small animal imaging research. Med Phys. 2025 Aug;52(8):e18057.
• Allphin AJ, Nadkarni R, Clark DP, Badea CT. Photon-counting micro-CT scanner for deep learning-enabled small animal perfusion imaging. Phys Med Biol. 2025 Jul 7;70(14).
• Clark DP, Cao JY, Badea CT. Denoising pediatric cardiac photon-counting CT data with sparse coding and data-adaptive, self-supervised deep learning. Med Phys. 2025 Jul;52(7):e17918.
• Clark DP, Badea CT. A deep-learning reconstruction framework for low-dose, dynamic x-ray CT. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2025.
• Nadkarni R, Clark DP, Allphin AJ, Qi Y, Mowery YM, Segars WP, et al. Development of a Virtual Photon-Counting Micro-CT Imaging Platform for Preclinical Cancer Studies. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2025.
• Badea CT, Chaparro E, Mace B, Allphin A, Nadkarni R, Han Z, et al. High-Resolution Micro-CT Imaging Protocols for Studies of Intracranial Aneurysms in Murine Models. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2025.
• Badea CT, Nadkarni R, Allphin A, Qi Y, Clark DP, Hainfeld JF. Exploring VivoVistu2122 for Ex Vivo Micro-CT Imaging of Mouse Vasculature. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2025.
• Nadkarni R, Allphin AJ, Clark DP, Qi Y, Han ZY, Ghaghada KB, et al. Exercise mitigates high-fat diet-induced cardiac dysfunction via APOE genotype- and immune-dependent mechanisms: A photon-counting CT study in adult mice. PLoS One. 2025;20(12):e0339293.
• Allphin AJ, Badea AM, Clark D, Badea CT. A perfusion phantom for dynamic micro-CT imaging. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2025.
• Allphin AJ, Nadkarni R, Clark D, Badea CT. Deep learning micro-CT perfusion quantification. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2025.
• Nadkarni R, Han ZY, Allphin AJ, Clark DP, Badea A, Badea CT. Quantitative Comparison of Femurs in Apolipoprotein E Mouse Models using High Resolution Photon-Counting Micro-CT. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2025.
• Allphin AJ, Nadkarni R, Han ZY, Clark DP, Ghaghada KB, Badea A, et al. Assessing the cardioprotective effects of exercise in APOE mouse models using deep learning and photon-counting micro-CT. PLoS One. 2025;20(4):e0320892.
• Nadkarni R, Han ZY, Allphin A, Clark D, Badea A, Badea C. Photon-Counting Micro-CT for High-Resolution Bone Morphometry in Murine Models. Preprints.org. 2025.
• Devkota L, Bhavane R, Badea CT, Tanifum EA, Annapragada AV, Ghaghada KB. Nanoparticle Contrast Agents for Photon-Counting Computed Tomography: Recent Developments and Future Opportunities. Wiley Interdiscip Rev Nanomed Nanobiotechnol. 2025;17(1):e70004.
• Nadkarni R, Clark DP, Allphin AJ, Badea CT. Investigating deep learning strategies for fast denoising of 5D cardiac photon-counting micro-CT images. Phys Med Biol. 2024 Sep 25;
• Allphin AJ, Nadkarni R, Clark DP, Gil CJ, Tomov ML, Serpooshan V, et al. Turn-table micro-CT scanner for dynamic perfusion imaging in mice: design, implementation, and evaluation. Phys Med Biol. 2024 Aug 23;69(17).
• Badea CT, Bhavane R, Allphin A, Nadkarni R, Clark DP, Annapragada A, et al. Photon counting micro-CT imaging of Bi2WO6 nanoparticles. In: Gimi BS, Krol A, editors. Medical Imaging 2024: Clinical and Biomedical Imaging. SPIE; 2024. p. 43u201343.
• Badea CT, Rickard A, Allphin A, Clark DP, Ghaghada KB, Ridwan S, et al. Enhancing in vivo preclinical studies with VivoVistu2122 and photon-counting micro-CT imaging. In: Gimi BS, Krol A, editors. Medical Imaging 2024: Clinical and Biomedical Imaging. SPIE; 2024. p. 29u201329.
• Blocker SJ, Mowery YM, Everitt JI, Cook J, Cofer GP, Qi Y, et al. MR histology reveals tissue features beneath heterogeneous MRI signal in genetically engineered mouse models of sarcoma. Front Oncol. 2024;14:1287479.
• Clark DP, Allphin A, Nadkarni R, Badea CT. Multi-Channel Reconstruction (MCR) Toolkit v2.0: open-source Python-based tools for X-ray CT reconstruction. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2024.
• Allphin AJ, Nadkarni R, Clark DP, Badea CT. An Acquisition-Based Approach for High-Fidelity Infilling of Photon-Counting X-ray Detector Pixel Gaps. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2024.
• Allphin AJ, Clark DP, Gil CJ, Tomov ML, Serpooshan V, Badea CT. Advancing Preclinical Micro-Photon Counting CT Perfusion Imaging: From Phantom Experiments to In Vivo Applications. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2024.
• Clark DP, Schwartz FR, Cao JY, Badea CT. Denoising pediatric cardiac photon-counting CT data using volumetric vision transformers and unpaired training data. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2024.
• Nadkarni R, Clark DP, Allphin A, Badea CT. Deep Learning Models for Rapid Denoising of 5D Cardiac Photon-Counting Micro-CT Images. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2024.
• Nadkarni R, Han ZY, Anderson RJ, Allphin AJ, Clark DP, Badea A, et al. High-resolution hybrid micro-CT imaging pipeline for mouse brain region segmentation and volumetric morphometry. PLoS One. 2024;19(5):e0303288.
• Moon HS, Mahzarnia A, Stout J, Anderson RJ, Han ZY, Tremblay JT, et al. Feature attention graph neural network for estimating brain age and identifying important neural connections in mouse models of genetic risk for Alzheimer's disease. Imaging Neurosci (Camb). 2024;2.
• Moon HS, Mahzarnia A, Stout J, Anderson RJ, Han ZY, Badea CT, et al. Predicting brain age and associated structural networks in mouse models with humanized APOE alleles using integrative and interpretable graph neural networks. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2024.
• Moon HS, Mahzarnia A, Stout J, Anderson RJ, Badea CT, Badea A. Feature attention graph neural network for estimating brain age and identifying important neural connections in mouse models of genetic risk for Alzheimer's disease. 2023.
• Gil CJ, Evans CJ, Li L, Allphin AJ, Tomov ML, Jin L, et al. Leveraging 3D Bioprinting and Photon-Counting Computed Tomography to Enable Noninvasive Quantitative Tracking of Multifunctional Tissue Engineered Constructs. Adv Healthc Mater. 2023 Dec;12(31):e2302271.
• Schwartz FR, Clark DP, Rigiroli F, Kalisz K, Wildman-Tobriner B, Thomas S, et al. Evaluation of the impact of a novel denoising algorithm on image quality in dual-energy abdominal CT of obese patients. Eur Radiol. 2023 Oct;33(10):7056u201365.
• Clark DP, Badea CT. MCR toolkit: A GPU-based toolkit for multi-channel reconstruction of preclinical and clinical x-ray CT data. Med Phys. 2023 Aug;50(8):4775u201396.
• Nadkarni R, Clark DP, Allphin AJ, Badea CT. A Deep Learning Approach for Rapid and Generalizable Denoising of Photon-Counting Micro-CT Images. Tomography. 2023 Jul 2;9(4):1286u2013302.
• Moore SM, Quirk JD, Lassiter AW, Laforest R, Ayers GD, Badea CT, et al. Co-Clinical Imaging Metadata Information (CIMI) for Cancer Research to Promote Open Science, Standardization, and Reproducibility in Preclinical Imaging. Tomography. 2023 May 11;9(3):995u20131009.
• Allphin AJ, Clark DP, Thuering T, Bhandari P, Ghaghada KB, Badea CT. Micro-CT imaging of multiple K-edge elements using GaAs and CdTe photon counting detectors. Phys Med Biol. 2023 Apr 12;68(8).
• Patel R, Mowery YM, Qi Y, Bassil AM, Holbrook M, Xu ES, et al. Supplementary table TS1 from Neoadjuvant Radiation Therapy and Surgery Improves Metastasis-Free Survival over Surgery Alone in a Primary Mouse Model of Soft Tissue Sarcoma. 2023.
• Patel R, Mowery YM, Qi Y, Bassil AM, Holbrook M, Xu ES, et al. Supplementary figure FS1 from Neoadjuvant Radiation Therapy and Surgery Improves Metastasis-Free Survival over Surgery Alone in a Primary Mouse Model of Soft Tissue Sarcoma. 2023.
• Patel R, Mowery YM, Qi Y, Bassil AM, Holbrook M, Xu ES, et al. Data from Neoadjuvant Radiation Therapy and Surgery Improves Metastasis-Free Survival over Surgery Alone in a Primary Mouse Model of Soft Tissue Sarcoma. 2023.
• Patel R, Mowery YM, Qi Y, Bassil AM, Holbrook M, Xu ES, et al. Supplementary figure FS2 from Neoadjuvant Radiation Therapy and Surgery Improves Metastasis-Free Survival over Surgery Alone in a Primary Mouse Model of Soft Tissue Sarcoma. 2023.
• Patel R, Mowery YM, Qi Y, Bassil AM, Holbrook M, Xu ES, et al. Supplementary figure FS3 from Neoadjuvant Radiation Therapy and Surgery Improves Metastasis-Free Survival over Surgery Alone in a Primary Mouse Model of Soft Tissue Sarcoma. 2023.
• Patel R, Mowery YM, Qi Y, Bassil AM, Holbrook M, Xu ES, et al. Supplementary figure FS1 from Neoadjuvant Radiation Therapy and Surgery Improves Metastasis-Free Survival over Surgery Alone in a Primary Mouse Model of Soft Tissue Sarcoma. 2023.
• Patel R, Mowery YM, Qi Y, Bassil AM, Holbrook M, Xu ES, et al. Supplementary table TS1 from Neoadjuvant Radiation Therapy and Surgery Improves Metastasis-Free Survival over Surgery Alone in a Primary Mouse Model of Soft Tissue Sarcoma. 2023.
• Patel R, Mowery YM, Qi Y, Bassil AM, Holbrook M, Xu ES, et al. Data from Neoadjuvant Radiation Therapy and Surgery Improves Metastasis-Free Survival over Surgery Alone in a Primary Mouse Model of Soft Tissue Sarcoma. 2023.
• Patel R, Mowery YM, Qi Y, Bassil AM, Holbrook M, Xu ES, et al. Supplementary figure FS3 from Neoadjuvant Radiation Therapy and Surgery Improves Metastasis-Free Survival over Surgery Alone in a Primary Mouse Model of Soft Tissue Sarcoma. 2023.
• Patel R, Mowery YM, Qi Y, Bassil AM, Holbrook M, Xu ES, et al. Supplementary figure FS4 from Neoadjuvant Radiation Therapy and Surgery Improves Metastasis-Free Survival over Surgery Alone in a Primary Mouse Model of Soft Tissue Sarcoma. 2023.
• Patel R, Mowery YM, Qi Y, Bassil AM, Holbrook M, Xu ES, et al. Supplementary figure FS2 from Neoadjuvant Radiation Therapy and Surgery Improves Metastasis-Free Survival over Surgery Alone in a Primary Mouse Model of Soft Tissue Sarcoma. 2023.
• Patel R, Mowery YM, Qi Y, Bassil AM, Holbrook M, Xu ES, et al. Supplementary figure FS4 from Neoadjuvant Radiation Therapy and Surgery Improves Metastasis-Free Survival over Surgery Alone in a Primary Mouse Model of Soft Tissue Sarcoma. 2023.
• Gammon ST, Cohen AS, Lehnert AL, Sullivan DC, Malyarenko D, Manning HC, et al. An Online Repository for Pre-Clinical Imaging Protocols (PIPs). Tomography. 2023 Mar 27;9(2):750u20138.
• Peehl DM, Badea CT, Chenevert TL, Daldrup-Link HE, Ding L, Dobrolecki LE, et al. Animal Models and Their Role in Imaging-Assisted Co-Clinical Trials. Tomography. 2023 Mar 16;9(2):657u201380.
• Patel R, Mowery YM, Qi Y, Bassil AM, Holbrook M, Xu ES, et al. Neoadjuvant Radiation Therapy and Surgery Improves Metastasis-Free Survival over Surgery Alone in a Primary Mouse Model of Soft Tissue Sarcoma. Mol Cancer Ther. 2023 Jan 3;22(1):112u201322.
• Allphin AJ, Clark DP, Thuering T, Bhandari P, Ghaghada KB, Badea CT. Spectral micro-CT imaging of multiple K-edge elements using GaAs and CdTe photon counting detectors. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2023.
• Clark DP, Schwartz FR, Euler A, Mergen V, Alkadhi H, Marin D, et al. Unsupervised learning of robust models for cardiac and photon-counting x-ray CT denoising. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2023.
• Allphin AJ, Mahzarnia A, Clark DP, Qi Y, Han ZY, Bhandari P, et al. Advanced photon counting CT imaging pipeline for cardiac phenotyping of apolipoprotein E mouse models. PLoS One. 2023;18(10):e0291733.
• Allphin AJ, Nadkarni R, Clark DP, Badea CT. Ex vivo high-resolution hybrid micro-CT imaging using photon counting and energy integrating detectors. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2023.
• Moon HS, Heffron L, Mahzarnia A, Obeng-Gyasi B, Holbrook M, Badea CT, et al. Automated multimodal segmentation of acute ischemic stroke lesions on clinical MR images. Magn Reson Imaging. 2022 Oct;92:45u201357.
• Nadkarni R, Allphin A, Clark DP, Badea CT. Material decomposition from photon-counting CT using a convolutional neural network and energy-integrating CT training labels. Phys Med Biol. 2022 Jul 18;67(15).
• Allphin AJ, Mowery YM, Lafata KJ, Clark DP, Bassil AM, Castillo R, et al. Photon Counting CT and Radiomic Analysis Enables Differentiation of Tumors Based on Lymphocyte Burden. Tomography. 2022 Mar 10;8(2):740u201353.
• Allphin AJ, Clark DP, Badea A, Badea CT. Anatomical and functional cardiac PCCT imaging pipeline for characterization of Apolipoprotein E mouse models. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2022.
• Clark DP, Badea CT. Volumetric, dual-domain x-ray CT reconstruction with deep learning. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2022.
• Allphin AJ, Mowery Y, Lafata KJ, Clark DP, Basil A, Castillo R, et al. Spectral micro-CT and nanoradiomic analysis for classification of tumors based on lymphocytic burden in cancer therapy studies. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2022.
• Badea CT, Clark DP, Alphin A, Ghaghada KB, Mowery YM. Photon Counting Micro-CT for Imaging Cisplatin. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2022.
• Clark DP, Abadi E, Felice N, Segars WP, Samei E, Badea CT. Cardiac CT reconstruction for vendor-neutral virtual imaging trials. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2022.
• Nadkarni R, Allphin A, Clark DP, Badea CT. Material Decomposition from Photon-Counting CT using a Convolutional Neural Network and Energy-Integrating CT Training Labels. In: Proceedings of SPIE the International Society for Optical Engineering. 2022.
• Badea CT, Clark DP, Alphin A, Ramirez-Giraldo JC, Bhandari P, Mowery YM, et al. Co-clinical photon counting CT research for multi-contrast imaging. In: Proceedings of SPIE the International Society for Optical Engineering. 2022.
• Clark DP, Allphin AJ, Mowery YM, Badea CT. Photon-counting X-ray CT perfusion imaging in animal models of cancer. In: Proceedings of SPIE the International Society for Optical Engineering. 2022.
• Badea C. Principles of Micro X-ray Computed Tomography. In: Ross B, Gambir SS, editors. Molecular Imaging Principles and Practice. Academic Press; 2021. p. 47u201364.
• Holbrook MD, Clark DP, Patel R, Qi Y, Bassil AM, Mowery YM, et al. Detection of Lung Nodules in Micro-CT Imaging Using Deep Learning. Tomography. 2021 Aug 7;7(3):358u201372.
• Clark DP, Badea CT. Advances in micro-CT imaging of small animals. Phys Med. 2021 Aug;88:175u201392.
• Schwartz FR, Clark DP, Ding Y, Ramirez-Giraldo JC, Badea CT, Marin D. Evaluating renal lesions using deep-learning based extension of dual-energy FoV in dual-source CT-A retrospective pilot study. Eur J Radiol. 2021 Jun;139:109734.
• Blocker SJ, Cook J, Mowery YM, Everitt JI, Qi Y, Hornburg KJ, et al. Ex Vivo MR Histology and Cytometric Feature Mapping Connect Three-dimensional in Vivo MR Images to Two-dimensional Histopathologic Images of Murine Sarcomas. Radiol Imaging Cancer. 2021 May;3(3):e200103.
• Lee C-L, Lee JW, Daniel AR, Holbrook M, Hasapis S, Wright AO, et al. Characterization of cardiovascular injury in mice following partial-heart irradiation with clinically relevant dose and fractionation. Radiother Oncol. 2021 Apr;157:155u201362.
• Badea A, Schmalzigaug R, Kim W, Bonner P, Ahmed U, Johnson GA, et al. Microcephaly with altered cortical layering in GIT1 deficiency revealed by quantitative neuroimaging. Magn Reson Imaging. 2021 Feb;76:26u201338.
• Holbrook MD, Clark DP, Badea CT. Deep learning based spectral distortion correction and decomposition for photon counting ct using calibration provided by an energy integrated detector. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2021.
• Clark DP, Badea CT. A constrained bregman framework for unsupervised convolutional denoising of multi-channel x-ray ct data. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2021.
• Holbrook MD, Clark DP, Patel R, Qi Y, Mowery YM, Badea CT. Towards deep learning detection of lung nodules using micro-CT. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2021.
• Holbrook MD, Clark DP, Badea CT. Dual source hybrid spectral micro-CT using an energy-integrating and a photon-counting detector. Phys Med Biol. 2020 Oct 21;65(20):205012.
• Shoghi KI, Badea CT, Blocker SJ, Chenevert TL, Laforest R, Lewis MT, et al. Co-Clinical Imaging Resource Program (CIRP): Bridging the Translational Divide to Advance Precision Medicine. Tomography. 2020 Sep;6(3):273u201387.
• Clark DP, Schwartz FR, Marin D, Ramirez-Giraldo JC, Badea CT. Deep learning based spectral extrapolation for dual-source, dual-energy x-ray computed tomography. Med Phys. 2020 Sep;47(9):4150u201363.
• Holbrook MD, Blocker SJ, Mowery YM, Badea A, Qi Y, Xu ES, et al. MRI-Based Deep Learning Segmentation and Radiomics of Sarcoma in Mice. Tomography. 2020 Mar;6(1):23u201333.
• Holbrook MD, Clark DP, Badea CT. Development of a spectral Micro-CT system using a photon counting detector with anti-coincidence corrections. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2020.
• Badea CT, Ghaghada K, Holbrook MD, Bhandari P, Clark DP, Qi Y, et al. A spectral CT study on iodine augmentation of radiation therapy and its potential for combination with chemotherapy. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2020.
• Holbrook MD, Clark DP, Badea CT. Hybrid energy integrating and photon counting micro-CT. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2020.
• Holbrook MD, Blocker SJ, Mowery Y, Badea A, Qi Y, Kirsch DG, et al. MRI-based radiomics of sarcomas in the preclinical arm of a Co-clinical trial. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2020.
• Blocker SJ, Holbrook MD, Mowery YM, Sullivan DC, Badea CT. The impact of respiratory gating on improving volume measurement of murine lung tumors in micro-CT imaging. PLoS One. 2020;15(2):e0225019.
• Clark DP, Badea CT. Fast spectral x-ray CT reconstruction with data-adaptive, convolutional regularization. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2020.
• Blocker SJ, Holbrook MD, Mowery YM, Sullivan DC, Badea CT. The impact of respiratory gating on improving volume measurement of murine lung tumors in micro-CT imaging. 2019 Oct 29;
• Lee C-L, Daniel AR, Holbrook M, Brownstein J, Silva Campos LD, Hasapis S, et al. Sensitization of Vascular Endothelial Cells to Ionizing Radiation Promotes the Development of Delayed Intestinal Injury in Mice. Radiat Res. 2019 Sep;192(3):258u201366.
• Clark D, Holbrook M, Lee C-L, Badea C. Photon-counting cine-cardiac CT in the mouse. 2019 Jun 4;
• Ma Z, Yu Y-R, Badea CT, Kovacs JJ, Xiong X, Comhair S, et al. Vascular Endothelial Growth Factor Receptor 3 Regulates Endothelial Function Through u03b2-Arrestin 1. Circulation. 2019 Mar 26;139(13):1629u201342.
• Badea CT, Clark DP, Holbrook M, Srivastava M, Mowery Y, Ghaghada KB. Functional imaging of tumor vasculature using iodine and gadolinium-based nanoparticle contrast agents: a comparison of spectral micro-CT using energy integrating and photon counting detectors. Phys Med Biol. 2019 Mar 12;64(6):065007.
• Holbrook M, Clark DP, Badea CT. Overcoming detector limitations of x-ray photon counting for preclinical microcomputed tomography. J Med Imaging (Bellingham). 2019 Jan;6(1):011004.
• Blocker SJ, Mowery YM, Holbrook MD, Qi Y, Kirsch DG, Johnson GA, et al. Bridging the translational gap: Implementation of multimodal small animal imaging strategies for tumor burden assessment in a co-clinical trial. PLoS One. 2019;14(4):e0207555.
• Clark DP, Holbrook M, Lee C-L, Badea CT. Photon-counting cine-cardiac CT in the mouse. PLoS One. 2019;14(9):e0218417.
• Clark DP, Badea CT. Spectral data completion for dual-source x-ray CT. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2019.
• Blocker SJ, Holbrook M, Mowery YM, Badea CT. To gate or not to gate: An evaluation of respiratory gating techniques to improve volume measurement of murine lung tumors in micro-CT imaging. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2019.
• Clark DP, Badea CT. Convolutional regularization methods for 4D, x-ray CT reconstruction. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2019.
• Holbrook M, Blocker SJ, Mowery YM, Badea CT. Multi-modal MRI segmentation of sarcoma tumors using convolutional neural networks. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2019.
• Holbrook M, Clark DP, Badea CT. Low-dose 4D cardiac imaging in small animals using dual source micro-CT. Phys Med Biol. 2018 Jan 9;63(2):025009.
• Badea CT. Small Animal X-ray Computed Tomography. In: Russo P, editor. Handbook of X-ray Imaging: Physics and Technology. CRC Press; 2018. p. 749u2013749.
• Ashton JR, Gottlin EB, Patz EF, West JL, Badea CT. A comparative analysis of EGFR-targeting antibodies for gold nanoparticle CT imaging of lung cancer. PLoS One. 2018;13(11):e0206950.
• Blocker SJ, Mowery YM, Holbrook MD, Qi Y, Kirsch DG, Johnson GA, et al. Bridging the translational gap: Implementation of multimodal small animal imaging strategies for tumor burden assessment in a co-clinical trial. 2018;
• Badea CT, Holbrook M, Clark DP, Ghaghada K. Spectral imaging of iodine and gadolinium nanoparticles using dual-energy CT. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2018.
• Holbrook M, Clark DP, Badea CT. Multiscale dual energy micro-CT for imaging using iodinated and gold nanoparticles. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2018.
• Holbrook M, Clark DP, Barber W, Badea CT. Development of a spectral photon-counting micro-CT system with a translate-rotate geometry. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2018.
• Clark DP, Holbrook M, Badea CT. Multi-energy CT decomposition using convolutional neural networks. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2018.
• Clark DP, Badea CT. Data-efficient methods for multi-channel x-ray CT reconstruction. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2018.
• Ashton JR, Castle KD, Qi Y, Kirsch DG, West JL, Badea CT. Dual-Energy CT Imaging of Tumor Liposome Delivery After Gold Nanoparticle-Augmented Radiation Therapy. Theranostics. 2018;8(7):1782u201397.
• Clark DP, Badea CT. Low-dose 4D myocardial perfusion with x-ray micro-CT. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2017.
• Clark DP, Badea CT. Localized and efficient cardiac CT reconstruction. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2017.
• Clark DP, Badea CT. A data-driven regularization strategy for statistical CT reconstruction. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2017.
• Clark DP, Badea CT. Hybrid spectral CT reconstruction. PLoS One. 2017;12(7):e0180324.
• Touch M, Clark DP, Barber W, Badea CT. A neural network-based method for spectral distortion correction in photon counting x-ray CT. Phys Med Biol. 2016 Aug 21;61(16):6132u201353.
• Spiliopoulos D, Kagadis GC, Karnabatidis D, Johnson GA, Badea CT. Digital Subtracted Angiography of Small Animals (Accepted). In: Kagadis GC, Ford NL, Loudos GK, Karnabatidis D, editors. Handbook of Small Animal Imaging: Preclinical Imaging, Therapy, and Applications. Taylor & Francis Books, Inc., CRC Press; 2016. p. 67u201375.
• Ashton JR, Hoye J, Deland K, Whitley M, Qi Y, Moding E, et al. A dual energy CT study on vascular effects of gold nanoparticles in radiation therapy. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2016.
• Clark DP, Badea CT. Resolution-enhancing hybrid, spectral CT reconstruction. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2016.
• Clark DP, Badea CT. Joint regularization for spectrooral CT reconstruction. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2016.
• Touch M, Clark DP, Barber W, Badea CT. Novel approaches to address spectral distortions in photon counting x-ray CT using artificial neural networks. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2016.
• Clark DP, Lee C-L, Kirsch DG, Badea CT. Spectrotemporal CT data acquisition and reconstruction at low dose. Med Phys. 2015 Nov;42(11):6317u201336.
• Liu Y, Badea C, Mistry N, Du2019Souza W. SU-C-303-07: Influence of Image Registration Algorithms and Noise Levels On the Accuracy of Fractional Regional Ventilation. Med Phys. 2015 Jun;42(6):3198.
• Liu Y, Ashton JR, Moding EJ, Yuan H, Register JK, Fales AM, et al. A Plasmonic Gold Nanostar Theranostic Probe for In Vivo Tumor Imaging and Photothermal Therapy. Theranostics. 2015;5(9):946u201360.
• Clark DP, Touch M, Barber W, Badea CT. Simultaneous imaging of multiple contrast agents using full-spectrum micro-CT. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2015.
• Ashton JR, West JL, Badea CT. In vivo small animal micro-CT using nanoparticle contrast agents. Front Pharmacol. 2015;6:256.
• Borg JS, Vu M-A, Badea C, Badea A, Johnson GA, Dzirasa K. Localization of Metal Electrodes in the Intact Rat Brain Using Registration of 3D Microcomputed Tomography Images to a Magnetic Resonance Histology Atlas. eNeuro. 2015;2(4).
• Clark DP, Badea CT. Spectral deblurring: An algorithm for high-resolution, hybrid spectral CT. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2015.
• Clark DP, Lee CL, Kirsch DG, Badea CT. Rank-sparsity constrained, spectro-temporal reconstruction for retrospectively gated, dynamic CT. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2015.
• Clark DP, Badea CT. Rank-sparsity constrained atlas construction and phenotyping. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2015.
• Clark DP, Badea CT. Spectral diffusion: an algorithm for robust material decomposition of spectral CT data. Phys Med Biol. 2014 Nov 7;59(21):6445u201366.
• Clark DP, Badea CT. Micro-CT of rodents: state-of-the-art and future perspectives. Phys Med. 2014 Sep;30(6):619u201334.
• Johnston SM, Johnson GA, Badea CT. Helical dual source cone-beam micro-CT. In: 2014 IEEE 11th International Symposium on Biomedical Imaging Isbi 2014. 2014. p. 177u201380.
• Badea CT, Panetta D. High-Resolution CT for Small-Animal Imaging Research. In: Brahme A, editor. Comprehensive Biomedical Physics. Oxford: Elsevier; 2014. p. 221u201342.
• Befera NT, Badea CT, Johnson GA. Comparison of 4D-microSPECT and microCT for murine cardiac function. Mol Imaging Biol. 2014 Apr;16(2):235u201345.
• Lee C-L, Min H, Befera N, Clark D, Qi Y, Das S, et al. Assessing cardiac injury in mice with dual energy-microCT, 4D-microCT, and microSPECT imaging after partial heart irradiation. Int J Radiat Oncol Biol Phys. 2014 Mar 1;88(3):686u201393.
• Clark DP, Johnson GA, Badea CT. A multi-resolution approach to retrospectively-gated cardiac micro-CT reconstruction. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2014.
• Ashton JR, Befera N, Clark D, Qi Y, Mao L, Rockman HA, et al. Anatomical and functional imaging of myocardial infarction in mice using micro-CT and eXIA 160 contrast agent. Contrast Media Mol Imaging. 2014;9(2):161u20138.
• Clark DP, Johnson GA, Badea CT. Robust material decomposition for spectral CT. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2014.
• Ashton JR, Clark DP, Moding EJ, Ghaghada K, Kirsch DG, West JL, et al. Dual-energy micro-CT functional imaging of primary lung cancer in mice using gold and iodine nanoparticle contrast agents: a validation study. PLoS One. 2014;9(2):e88129.
• Badea CT, Befera N, Clark D, Qi Y, Johnson GA. Dual-energy micro-CT imaging of pulmonary airway obstruction: Correlation with micro-SPECT. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2014.
• Clark D, Badea A, Johnson GA, Badea CT. Constructing a 4D murine cardiac micro-CT atlas for automated segmentation and phenotyping applications. Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2013 Jun 3;8669.
• Clark D, Johnston SM, Johnson GA, Badea CT. The effect of scatter correction on dual energy micro-CT. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2013.
• Mistry N, Badea C, Gullapalli R, Vujaskovic Z, Du2019 Souza W. WE-G-134-08: Extracting Fractional Regional Ventilation in Mice. Med Phys. 2013 Jun;40(6Part31):513.
• Moding EJ, Clark DP, Qi Y, Li Y, Ma Y, Ghaghada K, et al. Dual-energy micro-computed tomography imaging of radiation-induced vascular changes in primary mouse sarcomas. Int J Radiat Oncol Biol Phys. 2013 Apr 1;85(5):1353u20139.
• Clark DP, Ghaghada K, Moding EJ, Kirsch DG, Badea CT. In vivo characterization of tumor vasculature using iodine and gold nanoparticles and dual energy micro-CT. Phys Med Biol. 2013 Mar 21;58(6):1683u2013704.
• Bhavane R, Badea C, Ghaghada KB, Clark D, Vela D, Moturu A, et al. Dual-energy computed tomography imaging of atherosclerotic plaques in a mouse model using a liposomal-iodine nanoparticle contrast agent. Circ Cardiovasc Imaging. 2013 Mar 1;6(2):285u201394.
• Perez BA, Ghafoori AP, Lee C-L, Johnston SM, Li Y, Moroshek JG, et al. Assessing the radiation response of lung cancer with different gene mutations using genetically engineered mice. Front Oncol. 2013;3:72.
• Badea CT, Hedlund LW, Johnson GA. A LabVIEW Platform for Preclinical Imaging Using Digital Subtraction Angiography and Micro-CT. J Med Eng. 2013;2013:581617.
• Clark D, Badea A, Liu Y, Johnson GA, Badea CT. Registration-based segmentation of murine 4D cardiac micro-CT data using symmetric normalization. Phys Med Biol. 2012 Oct 7;57(19):6125u201345.
• Johnston SM, Johnson GA, Badea CT. Temporal and spectral imaging with micro-CT. Med Phys. 2012 Aug;39(8):4943u201358.
• Badea CT, Guo X, Clark D, Johnston SM, Marshall CD, Piantadosi CA. Dual-energy micro-CT of the rodent lung. Am J Physiol Lung Cell Mol Physiol. 2012 May 15;302(10):L1088u201397.
• Guo X, Johnston SM, Johnson GA, Badea CT. A comparison of sampling strategies for dual energy micro-CT. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2012.
• Johnston SM, Badea CT. A spectral calibration technique for x-ray CT. Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2012 May 4;8313.
• Badea CT, Guo X, Clark D, Johnston SM, Marshall C, Piantadosi C. Lung imaging in rodents using dual energy micro-CT. Proc SPIE Int Soc Opt Eng. 2012 Apr 3;8317.
• Clark D, Johnson GA, Badea CT. Denoising of 4D Cardiac Micro-CT Data Using Median-Centric Bilateral Filtration. In: Proc SPIE Int Soc Opt Eng. 2012.
• Guo X, Johnston SM, Qi Y, Johnson GA, Badea CT. 4D micro-CT using fast prospective gating. Phys Med Biol. 2012 Jan 7;57(1):257u201371.
• Bell RC, Rogith D, Johnson CW, Badea CT, Athreya KK, Espinosa G, et al. Data analysis: evaluation of nanoscale contrast agent enhanced CT scan to differentiate between benign and malignant lung cancer in mouse model. AMIA Annu Symp Proc. 2012;2012:27u201335.
• Badea CT, Athreya KK, Espinosa G, Clark D, Ghafoori AP, Li Y, et al. Computed tomography imaging of primary lung cancer in mice using a liposomal-iodinated contrast agent. PLoS One. 2012;7(4):e34496.
• Badea CT, Stanton IN, Johnston SM, Johnson GA, Therien MJ. Investigations on X-ray luminescence CT for small animal imaging. In: Proc SPIE Int Soc Opt Eng. 2012. p. 83130T.
• Zhang X, Badea C, Hood G, Wetzel A, Qi Y, Stiles J, et al. High-resolution reconstruction of fluorescent inclusions in mouse thorax using anatomically guided sampling and parallel Monte Carlo computing. Biomed Opt Express. 2011 Sep 1;2(9):2449u201360.
• Badea CT, Johnston SM, Qi Y, Johnson GA. 4D micro-CT for cardiac and perfusion applications with view under sampling. Phys Med Biol. 2011 Jun 7;56(11):3351u201369.
• Badea CT, Ghaghada K, Espinosa G, Strong L, Annapragada A. Multi-modality PET-CT imaging of breast cancer in an animal model using nanoparticle x-ray contrast agent and 18F-FDG. Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2011 May 16;7965.
• Badea CT, Johnston SM, Qi Y, Ghaghada K, Johnson GA. Dual-energy micro-CT imaging for differentiation of iodine- and gold-based nanoparticles. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2011.
• Johnston SM, Badea CT. Temporal and spectral reconstruction algorithms for x-ray CT. Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2011 May 13;7961.
• Rajagopal S, Kovacs J, Badea C, Johnson GA, Rockman HA, Piantadosi CA, et al. BETA-ARRESTINS REGULATE SIGNALING BY BONE MORPHOGENETIC PROTEIN TYPE II RECEPTOR IN PULMONARY ARTERIAL HYPERTENSION. Journal of the American College of Cardiology. 2011 Apr;57(14):E2046u2013E2046.
• Zhang X, Badea CT. Highly efficient detection in fluorescence tomography of quantum dots using time-gated acquisition and ultrafast pulsed laser. Proc SPIE Int Soc Opt Eng. 2011 Jan 23;7896.
• Ghaghada KB, Badea CT, Karumbaiah L, Fettig N, Bellamkonda RV, Johnson GA, et al. Evaluation of tumor microenvironment in an animal model using a nanoparticle contrast agent in computed tomography imaging. Acad Radiol. 2011 Jan;18(1):20u201330.
• Lin M, Qi Y, Chen AF, Badea CT, Johnson GA. Phenylephrine-modulated cardiopulmonary blood flow measured with use of X-ray digital subtraction angiography. J Pharmacol Toxicol Methods. 2011;64(2):180u20136.
• Badea CT, Hedlund LW, Cook J, Berridge BR, Johnson GA. Micro-CT imaging assessment of dobutamine-induced cardiac stress in rats. J Pharmacol Toxicol Methods. 2011;63(1):24u20139.
• Badea CT, Hedlund LW, Qi Y, Berridge B, Johnson GA. In vivo imaging of rat coronary arteries using bi-plane digital subtraction angiography. J Pharmacol Toxicol Methods. 2011;64(2):151u20137.
• Ladstu00e4tter F, Garrosa E, Badea C, Moreno B. Application of artificial neural networks to a study of nursing burnout. Ergonomics. 2010 Sep;53(9):1085u201396.
• Mos RB, Gabor MS, Nasui M, Petrisor T, Badea C, Rufoloni A, et al. Synthesis of epitaxial BaZrO3 thin films by chemical solution deposition. In: Thin Solid Films. Elsevier BV; 2010. p. 4714u20137.
• Johnston SM, Perez BA, Kirsch DG, Badea CT. Phase-selective image reconstruction of the lungs in small animals using Micro-CT. Proc SPIE Int Soc Opt Eng. 2010 Feb 15;7622:76223G.1-76223G.9.
• Dumbrava A, Badea C, Prodan G, Ciupina V. SYNTHESIS AND CHARACTERIZATION OF CADMIUM SULFIDE OBTAINED AT ROOM TEMPERATURE. CHALCOGENIDE LETTERS. 2010 Feb 1;7(2):111u20138.
• Johnston SM, Johnson GA, Badea CT. GPU-based iterative reconstruction with total variation minimization for micro-CT. In: Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 2010.
• Zhang X, Badea CT, Hood G, Wetzel AW, Stiles JR, Johnson GA. Free-space fluorescence tomography with adaptive sampling based on anatomical information from microCT. In: Proc SPIE Int Soc Opt Eng. 2010.
• Badea CT, Johnston SM, Subashi E, Qi Y, Hedlund LW, Johnson GA. Lung perfusion imaging in small animals using 4D micro-CT at heartbeat temporal resolution. Med Phys. 2010 Jan;37(1):54u201362.
• Ghafoori A, Lee C, Perez B, Johnston S, Rodrigues R, Badea C, et al. In Vivo shRNA to Study the Molecular Mechanisms of Radiation Response of Primary Cancers in Mice. In: International Journal of Radiation Oncology*Biology*Physics. Elsevier BV; 2009. p. S171u20132.
• Perez BA, Ghafoori AP, Johnston SM, Jeffords LB, Kim Y, Badea CT, et al. Dissecting the Mechanism of Tumor Response to Radiation Therapy with Primary Lung Cancers in Mice. In: International Journal of Radiation Oncology*Biology*Physics. Elsevier BV; 2009. p. S537u2013S537.
• Samei. Micro-CT imaging of breast tumors in rodents using a liposomal, nanoparticle contrast agent. International Journal of Nanomedicine. 2009 Nov;277u2013277.
• Lin M, Marshall CT, Qi Y, Johnston SM, Badea CT, Piantadosi CA, et al. Quantitative blood flow measurements in the small animal cardiopulmonary system using digital subtraction angiography. Med Phys. 2009 Nov;36(11):5347u201358.
• Dumbrava A, Badea C, Prodan G, Popovici I, Ciupina V. ZINC SULFIDE FINE PARTICLES OBTAINED AT LOW TEMPERATURE. CHALCOGENIDE LETTERS. 2009 Sep 1;6(9):437u201343.
• Badea CT, Johnston SM, Lin M, Hedlund LW, Johnson GA. 4D micro-CT-based perfusion imaging in small animals. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2009.
• Johnston SM, Johnson GA, Badea CT. A material decomposition method for dual energy micro-CT. In: Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2009.
• Zhang X, Badea C. Effects of sampling strategy on image quality in noncontact panoramic fluorescence diffuse optical tomography for small animal imaging. Opt Express. 2009 Mar 30;17(7):5125u201338.
• Zhang X, Badea C, Jacob M, Johnson GA. Development of a noncontact 3-D fluorescence tomography system for small animal in vivo imaging. In: Proc SPIE Int Soc Opt Eng. 2009. p. nihpa106691.
• Samei E, Saunders RS, Badea CT, Ghaghada KB, Hedlund LW, Qi Y, et al. Micro-CT imaging of breast tumors in rodents using a liposomal, nanoparticle contrast agent. Int J Nanomedicine. 2009;4:277u201382.
• Zhang X, Badea CT, Johnson GA. Three-dimensional reconstruction in free-space whole-body fluorescence tomography of mice using optically reconstructed surface and atlas anatomy. J Biomed Opt. 2009;14(6):064010.
• Dumbrava A, Georgescu A, Damache G, Badea C, Enache I, Oprea C, et al. Dye-sensitized solar cells based on nanocrystalline TiO2 and natural pigments. In: JOURNAL OF OPTOELECTRONICS AND ADVANCED MATERIALS. NATL INST OPTOELECTRONICS; 2008. p. 2996u20133002.
• Badea CT, Drangova M, Holdsworth DW, Johnson GA. In vivo small-animal imaging using micro-CT and digital subtraction angiography. Phys Med Biol. 2008 Oct 7;53(19):R319u201350.
• Johnson K, Badea C, Hedlund L, Johnson GA. Imaging techniques for small animal imaging models of pulmonary disease: Micro-CT (Toxicologic Pathology (2007) 35, 5 (9-64)). Toxicologic Pathology. 2008 Oct 1;36(6):895.
• Shofer S, Badea C, Qi Y, Potts E, Foster WM, Johnson GA. A micro-CT analysis of murine lung recruitment in bleomycin-induced lung injury. J Appl Physiol (1985). 2008 Aug;105(2):669u201377.
• Bogdan M, Parnau A, Badea C, Ardelean I. Time-Dependent Diffusion Studies on Miglyol Molecules Confined in Permeable Polymeric Capsules. In: Applied Magnetic Resonance. Springer Science and Business Media LLC; 2008. p. 63u20139.
• Saunders R, Samei E, Badea C, Yuan H, Ghaghada K, Qi Y, et al. Optimization of dual energy contrast enhanced breast tomosynthesis for improved mammographic lesion detection and diagnosis. Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2008 May 14;6913.
• Badea CT, Samei E, Ghaghada K, Saunders R, Yuan H, Qi Y, et al. Utility of a prototype liposomal contrast agent for x-ray imaging of breast cancer: A proof of concept using micro-CT in small animals. Progress in Biomedical Optics and Imaging Proceedings of SPIE. 2008 May 14;6913.
• Johnston SM, Johnson GA, Badea CT. Geometric calibration for a dual tube/detector micro-CT system. Med Phys. 2008 May;35(5):1820u20139.
• Badea CT, Johnston S, Johnson B, Lin M, Hedlund LW, Johnson GA. A dual micro-CT system for small animal imaging. In: Proc SPIE Int Soc Opt Eng. 2008. p. 691342.
• Badea CT, Schreibmann E, Fox T. A registration based approach for 4D cardiac micro-CT using combined prospective and retrospective gating. Med Phys. 2008 Apr;35(4):1170u20139.
• Badea CT, Wetzel AW, Mistry N, Pomerantz S, Nave D, Johnson GA. Left ventricle volume measurements in cardiac micro-CT: the impact of radiation dose and contrast agent. Comput Med Imaging Graph. 2008 Apr;32(3):239u201350.
• de Lin M, Ning L, Badea CT, Mistry NN, Qi Y, Johnson GA. A high-precision contrast injector for small animal x-ray digital subtraction angiography. IEEE Trans Biomed Eng. 2008 Mar;55(3):1082u201391.
• Schreibmann E, Badea C, Fox T. THu2010Cu2010351u201002: Registration Based Automatic Segmentation and Wall Motion Analysis for 4D Cardiac Microu2010CT in Mice. In: Medical Physics. 2008. p. 2974.
• Song J, Liu QH, Johnson GA, Badea CT. Sparseness prior based iterative image reconstruction for retrospectively gated cardiac micro-CT. Med Phys. 2007 Nov;34(11):4476u201383.
• Nahrendorf M, Badea C, Hedlund LW, Figueiredo J-L, Sosnovik DE, Johnson GA, et al. High-resolution imaging of murine myocardial infarction with delayed-enhancement cine micro-CT. Am J Physiol Heart Circ Physiol. 2007 Jun;292(6):H3172u20138.
• Badea CT, Hedlund LW, De Lin M, Mackel JSB, Samei E, Johnson GA. Tomographic digital subtraction angiography for lung perfusion estimation in rodents. Med Phys. 2007 May;34(5):1546u201355.
• Badea CT, Hedlund LW, Mackel JFB, Mao L, Rockman HA, Johnson GA. Cardiac micro-computed tomography for morphological and functional phenotyping of muscle LIM protein null mice. Mol Imaging. 2007;6(4):261u20138.
• Shofer S, Badea C, Auerbach S, Schwartz DA, Johnson GA. A micro-computed tomography-based method for the measurement of pulmonary compliance in healthy and bleomycin-exposed mice. Exp Lung Res. 2007;33(3u20134):169u201383.
• Wetzel AW, Badea CT, Pomerantz SM, Mistry N, Nave D, Johnson GA. Measurement and modeling of 4D live mouse heart volumes from CT time series. In: Proceedings of SPIE the International Society for Optical Engineering. 2007.
• De Lin M, Samei E, Badea CT, Yoshizumi TT, Allan Johnson G. Optimized radiographic spectra for small animal digital subtraction angiography. Med Phys. 2006 Nov;33(11):4249u201357.
• Oldham M, Sakhalkar H, Oliver T, Wang YM, Kirpatrick J, Cao Y, et al. Three-dimensional imaging of xenograft tumors using optical computed and emission tomography. Med Phys. 2006 Sep;33(9):3193u2013202.
• Mukundan S, Ghaghada KB, Badea CT, Kao C-Y, Hedlund LW, Provenzale JM, et al. A liposomal nanoscale contrast agent for preclinical CT in mice. AJR Am J Roentgenol. 2006 Feb;186(2):300u20137.
• Badea CT, Bucholz E, Hedlund LW, Rockman HA, Johnson GA. Imaging methods for morphological and functional phenotyping of the rodent heart. Toxicol Pathol. 2006;34(1):111u20137.
• Badea CT, Hedlund LW, De Lin M, Boslego Mackel JF, Johnson GA. Tumor imaging in small animals with a combined micro-CT/micro-DSA system using iodinated conventional and blood pool contrast agents. Contrast Media Mol Imaging. 2006;1(4):153u201364.
• Badea CT, Hedlund LW, Lin MD, Boslego JF, Johnson GA. Functional imaging in small animals using tomographic digital subtraction angiography. In: 2006 3rd IEEE International Symposium on Biomedical Imaging from Nano to Macro Proceedings. 2006. p. 1208u201311.
• Pallikarakis N. Development and evaluation of an ODL course on Medical Image Processing. Med Eng Phys. 2005 Sep;27(7):549u201354.
• Mau00ef W, Badea CT, Wheeler CT, Hedlund LW, Johnson GA. Effects of breathing and cardiac motion on spatial resolution in the microscopic imaging of rodents. Magn Reson Med. 2005 Apr;53(4):858u201365.
• Badea CT, Fubara B, Hedlund LW, Johnson GA. 4-D micro-CT of the mouse heart. Mol Imaging. 2005;4(2):110u20136.
• Badea C, Hedlund LW, Johnson GA. Micro-CT with respiratory and cardiac gating. Med Phys. 2004 Dec;31(12):3324u20139.
• Badea C, Gordon R. Experiments with the nonlinear and chaotic behaviour of the multiplicative algebraic reconstruction technique (MART) algorithm for computed tomography. Phys Med Biol. 2004 Apr 21;49(8):1455u201374.
• Badea C, Pallikarakis N. Development and evaluation of an ODL course on medical image processing. In: Proceedings of the IASTED International Conference on Web-Based Education. 2004. p. 470u20133.
• Badea CT, Hedlund LW, Wheeler CT, Mai W, Johnson GA. Volumetric micro-CT system for in vivo microscopy. In: 2004 2nd IEEE International Symposium on Biomedical Imaging Macro to Nano. 2004. p. 1377u201380.
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• Soimu D, Badea C, Pallikarakis N. A novel approach for distortion correction for X-ray image intensifiers. Comput Med Imaging Graph. 2003;27(1):79u201385.
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• Badea C, Kolitsi Z, Pallikarakis N. A 3D imaging system for dental imaging based on digital tomosynthesis and cone beam CT. In: Magjarevic R, Tonkovic S, Bilas V, Lackovic I, editors. MEDICON 2001: PROCEEDINGS OF THE INTERNATIONAL FEDERATION FOR MEDICAL & BIOLOGICAL ENGINEERING, PTS 1 AND 2. UNIV ZAGREB; 2001. p. 739u201341.
• Badea CT, Kolitsi Z, Pallikarakis N. A 3D imaging system for in-theatre orthopedic applications based on Digital Tomosynthesis. In: Lemke HU, Vannier MW, Inamura K, Farman AG, Doi K, editors. CARS. Elsevier; 2001. p. 1209u201310.
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