Data Analysis for 10x Visium Spatial Transcriptomics Data: Workshop 1

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Tuesday, September 12, 2023 - 9:00am to 11:00am

Presenter

Miko Liu

As spatial transcriptomics becomes a more prevalent tool in cancer, neurology studies and more, do you wonder how to analyze the data to make sense of the biology? This workshop includes three hands-on sessions (1.5-2 hours each), that will: •Introduce the 10x Visium platform: experimental procedures, applications, advantage & disadvantage compared to other technologies •Teach you step-by-step the analysis for Visium data: preprocessing, clustering and visualization •Downstream analyses: integration with single-cell data, using deconvolution tools to find cell types and cell-cell interactions